PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29612.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 193aa    MW: 22053.9 Da    PI: 8.4779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29612.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18754253
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  KHN29612.1  7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                69******9.**********8.....556*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.33E-34666No hitNo description
SuperFamilySSF541715.82E-21766IPR016177DNA-binding domain
SMARTSM003801.7E-41770IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
PfamPF008471.1E-11755IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-34764IPR001471AP2/ERF domain
PRINTSPR003673.2E-11819IPR001471AP2/ERF domain
PRINTSPR003673.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MARSQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR  60
TNFPYNPNAS QSSSSKLLSA TLTAKLHRCY MASLQMTRPS SQAEPQRVAS PNVITSSASN  120
FSMKSNETET LLLPQKRQEE EQEAEGNWVF KKVKVENAQQ FKPLEEDHIE QMIEELLHYG  180
SIELCSVIPP QAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18871670ATERF1
3gcc_A2e-18871670ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-158AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522460.11e-144PREDICTED: protein PPLZ02
SwissprotP161462e-83PZ02_LUPPO; Protein PPLZ02
TrEMBLA0A0B2RCL51e-143A0A0B2RCL5_GLYSO; Protein PPLZ02
TrEMBLA0A0R4J3491e-143A0A0R4J349_SOYBN; Uncharacterized protein
STRINGGLYMA04G06690.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-59ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]